I observed an issue with the background colours of frames managed by AUI. The aui demo looks like this:
I don’t know whether it’s related, but with 4.1.1 some of my toolbar icons have a black background instead of transparent: instead of this:
I did not yet have a close look.
I am also struggling with colours. Maybe related this post.
Other elements that don’t have colour management are windows frames (title bar, system menu) and menus.